/*******************************************************************************
 * Copyright (c) 2010 Attila Kovacs <attila_kovacs@post.harvard.edu>.
 * All rights reserved. 
 * 
 * This file is part of crush.
 * 
 *     crush is free software: you can redistribute it and/or modify
 *     it under the terms of the GNU General Public License as published by
 *     the Free Software Foundation, either version 3 of the License, or
 *     (at your option) any later version.
 * 
 *     crush is distributed in the hope that it will be useful,
 *     but WITHOUT ANY WARRANTY; without even the implied warranty of
 *     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *     GNU General Public License for more details.
 * 
 *     You should have received a copy of the GNU General Public License
 *     along with crush.  If not, see <http://www.gnu.org/licenses/>.
 * 
 * Contributors:
 *     Attila Kovacs <attila_kovacs@post.harvard.edu> - initial API and implementation
 ******************************************************************************/
// Copyright (c) 2009 Attila Kovacs 

package crush.sharc2;

import crush.*;
import nom.tam.fits.*;

import java.io.*;
import java.util.*;
import java.text.*;

import util.*;

public class Sharc2Scan extends Scan<Sharc2, Sharc2Integration> implements GroundBased, Weather {
	/**
	 * 
	 */
	private static final long serialVersionUID = -2008390740743369604L;

	double tau225GHz;
	double elevationResponse = 1.0;
	double ambientT, pressure, humidity;
	
	Vector2D horizontalOffset, fixedOffset;
	
	public int iMJD;	
	public long fileSize = -1;

	
	public Sharc2Scan(Sharc2 instrument) {
		super(instrument);
		site = new GeodeticCoordinates(
				-(155.0 * Unit.deg + 28.0 * Unit.arcmin + 33.0 * Unit.arcsec), 
				19.0 * Unit.deg  + 49.0 * Unit.arcmin + 21.0 * Unit.arcsec);
		isTracking = true;
	}

	@Override
	public Sharc2Integration getIntegrationInstance() {
		return new Sharc2Integration(this);
	}
	
	
	@Override
	public void validate() {
		super.validate();
	
		if(hasOption("elevation-response")) {
			try { 
				String fileName = Util.getSystemString(option("elevation-response").getValue());
				elevationResponse = new ElevationResponse(fileName).getValue(horizontal.elevation()); 
				System.err.println("   Relative beam efficiency is " + Util.f3.format(elevationResponse));
				for(Sharc2Integration integration : this) integration.gain *= elevationResponse;
			}
			catch(IOException e) { 
				System.err.println("WARNING! Cannot read elevation response table..."); 
				e.printStackTrace();
			}
		}
	}
	
	protected void read(Fits fits) throws IllegalStateException, HeaderCardException, FitsException {
		// Read in entire FITS file		
		BasicHDU[] HDU = fits.read();
		
		int i = 4; 
		BasicHDU firstDataHDU = null;
		while( !(firstDataHDU = HDU[i]).getHeader().getStringValue("EXTNAME").equalsIgnoreCase("SHARC2 Data") ) i++;
		
		// Load the instrument settings...
		readHeader(HDU[0], (BinaryTableHDU) HDU[1], (BinaryTableHDU) HDU[2], (BinaryTableHDU) HDU[3], firstDataHDU);
		
		Sharc2Integration integration = new Sharc2Integration(this);
		integration.read(HDU, i);
		add(integration);
		
		try { fits.getStream().close(); }
		catch(IOException e) {}
		
		horizontal = null;
		
		validate();
	}
	
	protected void readHeader(Fits fits) throws IllegalStateException, HeaderCardException, FitsException, IOException {
		int i = 4; 
		BasicHDU firstDataHDU = null;
		while(!(firstDataHDU = fits.getHDU(i)).getHeader().getStringValue("EXTNAME").equalsIgnoreCase("SHARC2 Data") ) i++;
		
		readHeader(fits.getHDU(0), (BinaryTableHDU) fits.getHDU(1), (BinaryTableHDU) fits.getHDU(2), 
					(BinaryTableHDU) fits.getHDU(4), firstDataHDU);		
		
		try { fits.getStream().close(); }
		catch(IOException e) {}
	}
	
	protected void readHeader(BasicHDU mainHDU, BinaryTableHDU hardwareHDU, BinaryTableHDU dspHDU, BinaryTableHDU pixelHDU, BasicHDU dataHDU) throws IllegalStateException, HeaderCardException, FitsException {	
		parseScanPrimaryHDU(mainHDU);
		clear();
		
		// Load the instrument settings...
		instrument.parseScanPrimaryHDU(mainHDU);
		instrument.parseHardwareHDU(hardwareHDU);
		instrument.parseDSPHDU(dspHDU);
		instrument.parsePixelHDU(pixelHDU);
		instrument.parseDataHeader(dataHDU.getHeader());
		instrument.validate(iMJD);
		
		horizontal = null;
	}
	
	
	public File getFile(String scanDescriptor) throws FileNotFoundException {
		File scanFile;

		String path = getDataPath();
		descriptor = scanDescriptor;
		
		try { 
			int scanNo = Integer.parseInt(scanDescriptor);
			String fileName = path + "sharc2-" + Util.d6.format(scanNo) + ".fits";
			scanFile = new File(fileName);
			if(!scanFile.exists()) {
				fileName += ".gz";
				scanFile = new File(fileName);
				if(!scanFile.exists()) throw new FileNotFoundException("Could Not find scan " + scanDescriptor); 
			}
		} 
		catch(NumberFormatException e) {
			scanFile = new File(scanDescriptor) ;	
			if(!scanFile.exists()) {
				scanFile = new File(path + scanDescriptor);
				if(!scanFile.exists()) throw new FileNotFoundException("Could Not find scan " + scanDescriptor); 
			} 
		}	

		fileSize = scanFile.length();

		return scanFile;
	}

	public void readScanInfo(String scanDescriptor) throws IOException, HeaderCardException, FitsException {
		readScanInfo(new Fits(getFile(scanDescriptor)));
	}

	protected void readScanInfo(Fits fits) throws IOException, HeaderCardException, FitsException {
		parseScanPrimaryHDU(fits.readHDU());		
		fits.skipHDU(3);

		BasicHDU nextHDU = fits.readHDU();
		while(!nextHDU.getHeader().getStringValue("EXTNAME").equalsIgnoreCase("SHARC2 Data") ) nextHDU = fits.readHDU();
		instrument.parseDataHeader(nextHDU.getHeader());
	}
	
	
	@Override
	public void read(String scanDescriptor) throws HeaderCardException, FitsException, FileNotFoundException {
		read(getFits(scanDescriptor));
	}
	
	@Override
	public void readHeader(String scanDescriptor) throws HeaderCardException, FitsException, FileNotFoundException, IOException {
		readHeader(getFits(scanDescriptor));
		Sharc2Integration integration = new Sharc2Integration(this);	
		add(integration);
	}
	
	public Fits getFits(String scanDescriptor) throws FileNotFoundException, FitsException {
		File file = getFile(scanDescriptor);
		boolean isCompressed = file.getName().endsWith(".gz");
		System.out.println(" Reading " + file.getPath() + "...");
		return new Fits(getFile(scanDescriptor), isCompressed);
	}

	protected void parseScanPrimaryHDU(BasicHDU hdu) throws HeaderCardException, FitsException {
		Header header = hdu.getHeader();

		// Scan Info
		serialNo = header.getIntValue("SCANNO");
		
		if(instrument.options.containsKey("serial")) instrument.setSerialOptions(serialNo);
		
		//site = new GeodesicCoordinates(header.getDoubleValue("TELLONGI") * Unit.deg, header.getDoubleValue("TELLATID") * Unit.deg);
		//System.err.println("   Location: " + site);
		
		creator = header.getStringValue("CREATOR");
		observer = header.getStringValue("OBSERVER");
		project = header.getStringValue("PROJECT");

		if(creator == null) creator = "Unknown";
		if(observer == null) observer = "Unknown";
		if(project == null) project = "Unknown";

		// Weather
		tau225GHz = header.getDoubleValue("TAU225GH");

		ambientT = header.getDoubleValue("TEMPERAT") * Unit.K + 273.16 * Unit.K;
		pressure = header.getDoubleValue("PRESSURE") * Unit.mbar;
		humidity = header.getDoubleValue("HUMIDITY");

		// Source Information
		sourceName = header.getStringValue("OBJECT");
		if(sourceName == null) sourceName = "Unknown";
		
		timeStamp = header.getStringValue("DATE-OBS");
		
		// increment month by 1 to correct JSharc FITS bug
		if(creator.equalsIgnoreCase("JSharc")) {
			System.err.println(" Fixing JSharc Time Stamp.");
			String modDate = timeStamp.substring(0, 5);
			modDate += Util.d2.format(Integer.parseInt(timeStamp.substring(5,7)) + 1 );
			modDate += timeStamp.substring(7);
			timeStamp = modDate;
			//System.err.println(modDate);
		}
		double epoch = header.getDoubleValue("EQUINOX");
		
		equatorial = new EquatorialCoordinates(
				header.getDoubleValue("RAEP") * Unit.hourAngle,
				header.getDoubleValue("DECEP") * Unit.deg,
				(epoch < 1984.0 ? "B" : "J") + epoch);
	
		// Print out some of the information...
		StringTokenizer tokens = new StringTokenizer(timeStamp, ":T");
		String dateString = tokens.nextToken();
		String timeString = tokens.nextToken() + ":" + tokens.nextToken() + " UT";
		
		System.err.println(" [" + sourceName + "] observed on " + dateString + " at " + timeString + " by " + observer);
		System.err.println(" Equatorial: " + equatorial.toString());	
		
		
		// TODO iMJD does not exist in earlier scans
		// need utility to convert DATE-OBS into MJD...
		// (AstroTime with Calendar
		
		if(header.containsKey("JUL_DAY")) iMJD = header.getIntValue("JUL_DAY");
		else {
			try { iMJD = (int)(AstroTime.forFitsTimeStamp(timeStamp).getMJD()); }
			catch(ParseException e) { throw new HeaderCardException(e.getMessage()); }
		}
		
		// Add on the various additional offsets
		
		horizontalOffset = new Vector2D(
				header.getDoubleValue("AZO") * Unit.arcsec,
				-header.getDoubleValue("ZAO") * Unit.arcsec);
		horizontalOffset.x += header.getDoubleValue("AZO_MAP") * Unit.arcsec;
		horizontalOffset.y -= header.getDoubleValue("ZAO_MAP") * Unit.arcsec;
		horizontalOffset.x += header.getDoubleValue("AZO_CHOP") * Unit.arcsec;		
		horizontalOffset.y -= header.getDoubleValue("ZAO_CHOP") * Unit.arcsec;
		horizontalOffset.x += header.getDoubleValue("CHPOFFST") * Unit.arcsec;
		
		Vector2D eqOffset = new Vector2D( 
				header.getDoubleValue("RAO") * Unit.arcsec,
				header.getDoubleValue("DECO") * Unit.arcsec);		
		eqOffset.x += header.getDoubleValue("RAO_MAP") * Unit.arcsec;
		eqOffset.y += header.getDoubleValue("DECO_MAP") * Unit.arcsec;
		eqOffset.x += header.getDoubleValue("RAO_FLD") * Unit.arcsec;
		eqOffset.y += header.getDoubleValue("DECO_FLD") * Unit.arcsec;

		fixedOffset = new Vector2D(header.getDoubleValue("FAZO") * Unit.arcsec, -header.getDoubleValue("FZAO") * Unit.arcsec);	
		
		DecimalFormat f3_1 = new DecimalFormat(" 0.0;-0.0");

		System.err.println("   AZO =" + f3_1.format(horizontalOffset.x/Unit.arcsec)
				+ "\tELO =" + f3_1.format(horizontalOffset.y/Unit.arcsec)
				+ "\tRAO =" + f3_1.format(eqOffset.x/Unit.arcsec)
				+ "\tDECO=" + f3_1.format(eqOffset.y/Unit.arcsec)
				
		);
		
		System.err.println("   FAZO=" + f3_1.format(fixedOffset.x/Unit.arcsec)
				+ "\tFZAO=" + f3_1.format(-fixedOffset.y/Unit.arcsec)
		);
		
		equatorial.addOffset(eqOffset);
	
		// Add pointing corrections...
		if(hasOption("fazo")) {
			double fazo = option("fazo").getDouble() * Unit.arcsec;
			horizontalOffset.x += fixedOffset.x - fazo;
			fixedOffset.x = fazo;
		}
		if(hasOption("fzao")) {
			double felo = -option("fzao").getDouble() * Unit.arcsec;
			horizontalOffset.y += fixedOffset.y - felo;
			fixedOffset.y = felo;
		}
		
		
	}

	
	@Override
	public void editHeader(Header header) throws FitsException, HeaderCardException, IOException {	
		super.editHeader(header);
		header.addValue("MJD", iMJD, "Modified Julian Day.");
		header.addValue("FAZO", fixedOffset.x / Unit.arcsec, "Fixed AZ pointing offset.");
		header.addValue("FZAO", -fixedOffset.y / Unit.arcsec, "Fixed ZA pointing offset.");
		header.addValue("ELGAIN", elevationResponse, "Relative response at elevation.");
		header.addValue("TEMPERAT", ambientT / Unit.K, "Ambient temperature (K).");
		header.addValue("PRESSURE", pressure / Unit.mbar, "Atmospheric pressure (mbar).");
		header.addValue("HUMIDITY", humidity, "Humidity (%).");
	}
	
	public double getAmbientHumidity() {
		return humidity;
	}

	public double getAmbientPressure() {
		return pressure;
	}

	public double getAmbientTemperature() {
		return ambientT;
	}

	public double getWindDirection() {
		return Double.NaN;
	}

	public double getWindPeak() {
		return Double.NaN;
	}

	public double getWindSpeed() {
		return Double.NaN;
	}
	
}
