Class SharcScan

java.lang.Object
  SharcScan

All Implemented Interfaces:

java.lang.Cloneable

public class SharcScan
extends java.lang.Object
implements java.lang.Cloneable

Field Summary

Vector2D

reuseOffset

Constructor Summary

SharcScan()

Method Summary

void	accelerationClip(double maxa)
double	adjustTransparencies()
void	autoLookup()
void	calcdIdT()
void	calcDirectTau()
void	calcDirectTransmission()
void	calcExcessLoad()
void	calcGainCoefficients()
void	calcI0()
void	calcOverallGain()
void	calcPixelGains()
void	calcSharcTau()
java.lang.Object	clone()
SharcScan	duplicate()
void	editHeader(nom.tam.util.Cursor cursor)
void	editHeader(nom.tam.fits.Header header)
void	flag(int bol, int pattern)
void	flagInvalidGains()
double	getActualLoadTemperature()
ChopperState[]	getChopperStates()
double[][]	getCovariance()
double[][]	getCovariance(int b1)
double	getDirectTau()
double	getDirectTau(double trans)
double	getDirectTransmission()
java.io.File	getFile(java.lang.String scanDescriptor)
void	getFitTau()
void	getGainCoefficients()
nom.tam.fits.BinaryTableHDU	getHDU()
int[][]	getHistogram(double range, double resolution)
short[]	getMapIndexes(int t, int bol)
Vector2D	getMapOffsets(int t, int bol)
double	getOpticalLoadTemperature()
void	getPositionDerivatives()
void	highPassFilter(double timeScale)
void	init()
void	invert()
boolean	key(java.lang.String key, java.lang.String value)
void	level()
void	logEntry(java.lang.String fileName)
void	makeCensus()
void	makeHDU()
void	makeIndexLookup()
void	makeMask(ReducedData reduced)
void	normalizeGains()
boolean	option(java.lang.String key, java.lang.String value)
void	parseHeader(nom.tam.fits.Header header)
void	parsePixelFile(java.lang.String fileName)
void	read(nom.tam.fits.BinaryTableHDU hdu)
void	read(int scanNo)
void	read(java.lang.String scanDescriptor)
void	readScanInfo(int scanNo)
void	readScanInfo(java.lang.String scanDescriptor)
void	recalcPixelZeroLoadCoeffs()
void	scramble()
void	shiftData(java.util.Vector frameBuffer, double dt)
void	totalPower()
void	unflag(int bol, int pattern)
void	usage()
void	velocityClip(double minv)
void	writeCovariance()
void	writeCovariance(int bol)
void	writeGainCoefficients()
void	writeIndex()
void	writeResiduals()
void	writeResiduals(java.lang.String fileName)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

reuseOffset

public Vector2D reuseOffset

Constructor Detail

SharcScan

public SharcScan()

Method Detail

clone

public java.lang.Object clone()

Overrides:

clone in class java.lang.Object

duplicate

public SharcScan duplicate()

init

public void init()

makeCensus

public void makeCensus()

flagInvalidGains

public void flagInvalidGains()

calcPixelGains

public void calcPixelGains()

calcOverallGain

public void calcOverallGain()

normalizeGains

public void normalizeGains()

calcdIdT

public void calcdIdT()

calcI0

public void calcI0()

getDirectTransmission

public double getDirectTransmission()

calcDirectTransmission

public void calcDirectTransmission()

getDirectTau

public double getDirectTau()

getDirectTau

public double getDirectTau(double trans)

calcDirectTau

public void calcDirectTau()

getOpticalLoadTemperature

public double getOpticalLoadTemperature()

recalcPixelZeroLoadCoeffs

public void recalcPixelZeroLoadCoeffs()

getActualLoadTemperature

public double getActualLoadTemperature()

calcExcessLoad

public void calcExcessLoad()

adjustTransparencies

public double adjustTransparencies()

getGainCoefficients

public void getGainCoefficients()
                         throws java.io.IOException

Throws:

java.io.IOException

writeGainCoefficients

public void writeGainCoefficients()
                           throws java.io.IOException

Throws:

java.io.IOException

calcGainCoefficients

public void calcGainCoefficients()

calcSharcTau

public void calcSharcTau()

getFitTau

public void getFitTau()
               throws java.io.IOException

Throws:

java.io.IOException

getPositionDerivatives

public void getPositionDerivatives()

velocityClip

public void velocityClip(double minv)

accelerationClip

public void accelerationClip(double maxa)

getMapIndexes

public short[] getMapIndexes(int t,
                             int bol)

getMapOffsets

public Vector2D getMapOffsets(int t,
                              int bol)

autoLookup

public void autoLookup()

makeIndexLookup

public void makeIndexLookup()
                     throws java.lang.OutOfMemoryError

Throws:

java.lang.OutOfMemoryError

writeIndex

public void writeIndex()

writeResiduals

public void writeResiduals()

writeCovariance

public void writeCovariance()
                     throws nom.tam.fits.FitsException,
                            nom.tam.fits.HeaderCardException,
                            java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

writeCovariance

public void writeCovariance(int bol)
                     throws nom.tam.fits.FitsException,
                            nom.tam.fits.HeaderCardException,
                            java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

writeResiduals

public void writeResiduals(java.lang.String fileName)

makeMask

public void makeMask(ReducedData reduced)

flag

public void flag(int bol,
                 int pattern)

unflag

public void unflag(int bol,
                   int pattern)

parsePixelFile

public void parsePixelFile(java.lang.String fileName)
                    throws java.io.IOException

Throws:

java.io.IOException

getFile

public java.io.File getFile(java.lang.String scanDescriptor)

readScanInfo

public void readScanInfo(java.lang.String scanDescriptor)
                  throws java.io.IOException,
                         nom.tam.fits.HeaderCardException,
                         nom.tam.fits.FitsException

Throws:

java.io.IOException

nom.tam.fits.HeaderCardException

nom.tam.fits.FitsException

readScanInfo

public void readScanInfo(int scanNo)
                  throws java.io.IOException,
                         nom.tam.fits.HeaderCardException,
                         nom.tam.fits.FitsException

Throws:

java.io.IOException

nom.tam.fits.HeaderCardException

nom.tam.fits.FitsException

read

public void read(java.lang.String scanDescriptor)
          throws nom.tam.fits.HeaderCardException,
                 nom.tam.fits.FitsException

Throws:

nom.tam.fits.HeaderCardException

nom.tam.fits.FitsException

read

public void read(int scanNo)
          throws nom.tam.fits.HeaderCardException,
                 nom.tam.fits.FitsException

Throws:

nom.tam.fits.HeaderCardException

nom.tam.fits.FitsException

totalPower

public void totalPower()

getChopperStates

public ChopperState[] getChopperStates()

highPassFilter

public void highPassFilter(double timeScale)

shiftData

public void shiftData(java.util.Vector frameBuffer,
                      double dt)

scramble

public void scramble()

invert

public void invert()

level

public void level()

getHDU

public nom.tam.fits.BinaryTableHDU getHDU()
                                   throws nom.tam.fits.FitsException,
                                          nom.tam.fits.HeaderCardException,
                                          java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

makeHDU

public void makeHDU()
             throws nom.tam.fits.FitsException,
                    nom.tam.fits.HeaderCardException,
                    java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

read

public void read(nom.tam.fits.BinaryTableHDU hdu)
          throws nom.tam.fits.FitsException,
                 nom.tam.fits.HeaderCardException,
                 java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

editHeader

public void editHeader(nom.tam.fits.Header header)
                throws nom.tam.fits.FitsException,
                       nom.tam.fits.HeaderCardException,
                       java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

editHeader

public void editHeader(nom.tam.util.Cursor cursor)
                throws nom.tam.fits.FitsException,
                       nom.tam.fits.HeaderCardException,
                       java.io.IOException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

java.io.IOException

parseHeader

public void parseHeader(nom.tam.fits.Header header)
                 throws nom.tam.fits.FitsException,
                        nom.tam.fits.HeaderCardException

Throws:

nom.tam.fits.FitsException

nom.tam.fits.HeaderCardException

getCovariance

public double[][] getCovariance()

getCovariance

public double[][] getCovariance(int b1)

getHistogram

public int[][] getHistogram(double range,
                            double resolution)

logEntry

public void logEntry(java.lang.String fileName)
              throws java.io.IOException

Throws:

java.io.IOException

key

public boolean key(java.lang.String key,
                   java.lang.String value)

option

public boolean option(java.lang.String key,
                      java.lang.String value)

usage

public void usage()